Mathematical analysis of biological networks


NASCENT Protein network mapper


Dániel Bánky, Gábor Iván, Vince Grolmusz: Equal Opportunity for Low-Degree Network Nodes: A PageRank-Based Method for Protein Target Identification in Metabolic Graphs, PLoS ONE 8(1): e54204. doi:10.1371/journal.pone.0054204, published on January 29, 2013

Lilla Tóthmérész, Vince Grolmusz: Characterizing the Functional Similarity of Enzymes with high Co-Citation in Interaction Networks, Protein and Peptide Letters, Vol. 20, 2013, pp. 1181-1187 (Also available as a personal preprint version).

Vince Grolmusz:  A Note on the PageRank of Undirected Graphs, Information Processing Letters, 115 (2015), pp. 633-634.,  also in arXiv 1205.1960, May 10, 2012

Gábor Iván,  Vince Grolmusz: When the Web Meets the Cell: Using Personalized PageRank for Analyzing Protein Interaction Networks,   Bioinformatics Vol. 27, No. 3. pp. 405-407.

Dániel Bánky, Rafael Ördög, Vince Grolmusz: NASCENT: An automatic protein interaction network generation tool for non-model organisms. Bioinformation Vol. 3 No. 8. pp. 361-363 (2009)